Can ferric-oxyl excited states explain elongated iron-oxygen bonds in heme peroxidase catalytic intermediates?
Abstract
Abstract The use of X-ray structures to determine and interpret the ferryl iron-oxygen bond order in molecular oxygen-activating heme enzymes has, in the past, been controversial. This has mainly stemmed from the susceptibility of ferryl species to X-ray-induced electronic state changes. In this work we establishe using time-resolved serial femtosecond X-ray crystallography (tr-SFX) on a dye-decolourising peroxidase that the ferryl intermediate species (Compounds I and II) captured following in situ mixing of microcrystals with H 2 O 2 have single, rather than the double bond character expected. X-ray emission validated tr-SFX data with quantum refinement, time-dependent-DFT calculations and QM/MM geometry optimizations together support the concept that the single iron-oxygen bond character is not an indication of ferryl reduction or a protonated form (Fe IV -OH) but is instead attributed to the existence of accessible excited states possessing ferric-oxyl (Fe III –O •– ) character. Such states offer insight into the nature of ferryl heme.
Article Details
Authors (27)
Lewis J. Williams
Jos J.A.G. Kamps
Adrian M. V. Brânzanic
Maria Lehene
Kristoffer J. M. Lundgren
Ulf Ryde
Division of Computational Chemistry, Department of Chemistry
Kuntal Chatterjee
Margaret D. Doyle
Philipp S. Simon
Hiroki Makita
Amy J. Thompson
Aaron S. Brewster
Molecular Biophysics & Integrated Bioimaging Division, Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, California 94720, United States
Tiankun Zhou
Marina Lučić
Michael T. Wilson
Pierre Aller
Juan Sanchez-Weatherby
Leland Gee
Sebastian Dehe
Sandra Mous
Junko Yano
Vittal K. Yachandra
Michael A. Hough
Allen M. Orville
Research Complex at Harwell
Jan F. Kern
Radu L. Silaghi-Dumitrescu
Jonathan A. R. Worrall