Can ferric-oxyl excited states explain elongated iron-oxygen bonds in heme peroxidase catalytic intermediates?

L Lewis J. Williams J Jos J.A.G. Kamps A Adrian M. V. Brânzanic M Maria Lehene K Kristoffer J. M. Lundgren U Ulf Ryde (Division of Computational Chemistry, Department of Chemistry) K Kuntal Chatterjee M Margaret D. Doyle P Philipp S. Simon H Hiroki Makita A Amy J. Thompson A Aaron S. Brewster (Molecular Biophysics & Integrated Bioimaging Division, Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, California 94720, United States) T Tiankun Zhou M Marina Lučić M Michael T. Wilson P Pierre Aller J Juan Sanchez-Weatherby L Leland Gee S Sebastian Dehe S Sandra Mous J Junko Yano V Vittal K. Yachandra M Michael A. Hough A Allen M. Orville (Research Complex at Harwell) J Jan F. Kern R Radu L. Silaghi-Dumitrescu J Jonathan A. R. Worrall

Abstract

Abstract The use of X-ray structures to determine and interpret the ferryl iron-oxygen bond order in molecular oxygen-activating heme enzymes has, in the past, been controversial. This has mainly stemmed from the susceptibility of ferryl species to X-ray-induced electronic state changes. In this work we establishe using time-resolved serial femtosecond X-ray crystallography (tr-SFX) on a dye-decolourising peroxidase that the ferryl intermediate species (Compounds I and II) captured following in situ mixing of microcrystals with H 2 O 2 have single, rather than the double bond character expected. X-ray emission validated tr-SFX data with quantum refinement, time-dependent-DFT calculations and QM/MM geometry optimizations together support the concept that the single iron-oxygen bond character is not an indication of ferryl reduction or a protonated form (Fe IV -OH) but is instead attributed to the existence of accessible excited states possessing ferric-oxyl (Fe III –O •– ) character. Such states offer insight into the nature of ferryl heme.

Article Details

Volume / Issue Vol. 17, Issue 1
Published February 03, 2026
ISSN 2041-1723
Publisher Nature Portfolio

Journal Info

Nature Communications

Nature Portfolio

ISSN: 2041-1723 Open Access Life Sciences

Authors (27)

L

Lewis J. Williams

J

Jos J.A.G. Kamps

A

Adrian M. V. Brânzanic

M

Maria Lehene

K

Kristoffer J. M. Lundgren

U

Ulf Ryde

Division of Computational Chemistry, Department of Chemistry

K

Kuntal Chatterjee

M

Margaret D. Doyle

P

Philipp S. Simon

H

Hiroki Makita

A

Amy J. Thompson

A

Aaron S. Brewster

Molecular Biophysics & Integrated Bioimaging Division, Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, California 94720, United States

T

Tiankun Zhou

M

Marina Lučić

M

Michael T. Wilson

P

Pierre Aller

J

Juan Sanchez-Weatherby

L

Leland Gee

S

Sebastian Dehe

S

Sandra Mous

J

Junko Yano

V

Vittal K. Yachandra

M

Michael A. Hough

A

Allen M. Orville

Research Complex at Harwell

J

Jan F. Kern

R

Radu L. Silaghi-Dumitrescu

J

Jonathan A. R. Worrall