Automated elucidation of crystal and electronic structures in boron nitride from X-ray absorption spectra using uniform manifold approximation and projection

R Reika Hasegawa A Arpita Varadwaj A Alexandre Lira Foggiatto M Masahito Niibe T Takahiro Yamazaki M Masafumi Horio (Department of Physics) Y Yasunobu Ando (Laboratory for Chemistry and Life Science, Institute of Integrated Research, Institute of Science Tokyo, 4259 Nagatsuta-cho, Midori-ku, Yokohama, Kanagawa 226-8503, Japan) T Takahiro Kondo (Department of Materials Science, Institute of Pure and Applied Sciences, University of Tsukuba, 1-1-1 Tennodai, Tsukuba, Ibaraki 305-8573, Japan) I Iwao Matsuda (International Center for Synchrotron Radiation Innovation Smart (SRIS), Tohoku University, 468-1, Aramaki-Aza-Aoba, Aoba-ku, Sendai 980-8572, Japan) M Masato Kotsugi

Abstract

Abstract X-ray absorption spectroscopy (XAS) provides valuable information on the structure and electronic states of materials. Its spectral profiles are complex, influenced by crystal structure and defects, and require extensive expertise for conventional analysis. This study presents an automated XAS analysis approach using various dimension reduction methods to characterize crystal and electronic structure. We show that, Uniform Manifold Approximation and Projection (UMAP), outperforms traditional methods such as Principal Component Analysis (PCA) and Multidimensional Scaling (MDS) in capturing the key features of complex spectra. Applying UMAP to simulated XAS spectra of boron nitride (BN), high-dimensional data can be precisely classified by crystal system, defect type, and structural dimensionality. By correlating UMAP-derived embeddings with electronic states, we identify nontrivial electronic properties. The successful application of this model to experimental data demonstrates its potential for autonomous structural identification, offering new possibilities for data-driven materials design and advancing novel material development.

Article Details

Volume / Issue Vol. 15, Issue 1
Published November 10, 2025
ISSN 2045-2322
Publisher Nature Portfolio

Journal Info

Scientific Reports

Nature Portfolio

ISSN: 2045-2322 Open Access Life Sciences

Authors (10)

R

Reika Hasegawa

A

Arpita Varadwaj

A

Alexandre Lira Foggiatto

M

Masahito Niibe

T

Takahiro Yamazaki

M

Masafumi Horio

Department of Physics

Y

Yasunobu Ando

Laboratory for Chemistry and Life Science, Institute of Integrated Research, Institute of Science Tokyo, 4259 Nagatsuta-cho, Midori-ku, Yokohama, Kanagawa 226-8503, Japan

T

Takahiro Kondo

Department of Materials Science, Institute of Pure and Applied Sciences, University of Tsukuba, 1-1-1 Tennodai, Tsukuba, Ibaraki 305-8573, Japan

I

Iwao Matsuda

International Center for Synchrotron Radiation Innovation Smart (SRIS), Tohoku University, 468-1, Aramaki-Aza-Aoba, Aoba-ku, Sendai 980-8572, Japan

M

Masato Kotsugi