An in vitro BRAF activation assay elucidates molecular mechanisms driving disassembly of the autoinhibited BRAF state

D Daniel A. Ritt (Laboratory of Cell and Developmental Signaling, Center for Cancer Research, National Cancer Institute) D David E. Durrant (Laboratory of Cell and Developmental Signaling, Center for Cancer Research, National Cancer Institute) M Matthew R. Drew (National Cancer Institute RAS Initiative, Cancer Research Technology Program, Frederick National Laboratory for Cancer Research, Leidos Biomedical Research, Inc.) S Suzanne I. Sandin (National Cancer Institute RAS Initiative, Cancer Research Technology Program, Frederick National Laboratory for Cancer Research, Leidos Biomedical Research, Inc.) J Juliana A. Martinez Fiesco (Center for Structural Biology, Center for Cancer Research, National Cancer Institute) X Xiaohua Zhang F Fikret Aydin T Timothy S. Carpenter G Grace M. Scheidemantle (National Cancer Institute RAS Initiative, Cancer Research Technology Program, Frederick National Laboratory for Cancer Research, Leidos Biomedical Research, Inc.) R Robert A. D’Ippolito (National Cancer Institute RAS Initiative, Cancer Research Technology Program, Frederick National Laboratory for Cancer Research, Leidos Biomedical Research, Inc.) A Alexandria L. Sohn (National Cancer Institute RAS Initiative, Cancer Research Technology Program, Frederick National Laboratory for Cancer Research, Leidos Biomedical Research, Inc.) C Caroline J. DeHart (National Cancer Institute RAS Initiative, Cancer Research Technology Program, Frederick National Laboratory for Cancer Research, Leidos Biomedical Research, Inc.) R Rebika Shrestha K Kelly Snead (National Cancer Institute RAS Initiative, Cancer Research Technology Program, Frederick National Laboratory for Cancer Research, Leidos Biomedical Research, Inc.) J Jenna Hull (National Cancer Institute RAS Initiative, Cancer Research Technology Program, Frederick National Laboratory for Cancer Research, Leidos Biomedical Research, Inc.) J Jeremy O. B. Tempkin (Biosciences and Biotechnology Division, Physical and Life Sciences Directorate, Lawrence Livermore National Laboratory) Y Yue Yang F Felice C. Lightstone F Frederick H. Streitz P Ping Zhang T Thomas J. Turbyville A Andrew G. Stephen D Dominic Esposito (National Cancer Institute RAS Initiative, Cancer Research Technology Program, Frederick National Laboratory for Cancer Research, Leidos Biomedical Research, Inc.) H Helgi I. Ingólfsson D Dwight V. Nissley D Deborah K. Morrison (Laboratory of Cell and Developmental Signaling, Center for Cancer Research, National Cancer Institute)

Abstract

The RAF kinases (ARAF, BRAF, and CRAF) are essential components of the RAS-ERK signaling pathway, which controls vital cellular processes and is frequently dysregulated in human disease. Notably, mutations that alter BRAF function are prominent drivers of human cancer and certain RASopathy disorders, making BRAF an important target for therapeutic intervention. Despite extensive research, several aspects of BRAF regulation remain unclear. In this study, we developed an in vitro BRAF activation assay using purified autoinhibited BRAF:14-3-3 2 :MEK complexes. Our results show that fully processed, active-state KRAS alone can promote dimer-dependent BRAF activation. Moreover, we found that phosphatidylserine (PS)-containing liposomes synergized with KRAS to promote BRAF activation, achieving activity levels comparable to those observed with BRAF proteins that constitutively dimerize. In contrast, the SMP phosphatase complex had only a minimal effect on BRAF catalytic activity in this system but mediated the dephosphorylation of the negative regulatory pS365 14-3-3 binding site in a manner that was accelerated by the presence of KRAS alone or KRAS and 30% PS liposomes. Finally, we show that inhibitors blocking the BRAF RBD:KRAS interaction were able to suppress the in vitro activation of BRAF, underscoring the critical role of RAS binding in initiating the disassembly of the BRAF autoinhibited state. Thus, this assay provides valuable insights into the steps required for BRAF activation and can serve as an effective screening tool for identifying compounds that may inhibit this process and have therapeutic potential.

Article Details

Volume / Issue Vol. 122, Issue 38
Published September 23, 2025
ISSN 0027-8424
Publisher National Academy of Sciences

Authors (26)

D

Daniel A. Ritt

Laboratory of Cell and Developmental Signaling, Center for Cancer Research, National Cancer Institute

D

David E. Durrant

Laboratory of Cell and Developmental Signaling, Center for Cancer Research, National Cancer Institute

M

Matthew R. Drew

National Cancer Institute RAS Initiative, Cancer Research Technology Program, Frederick National Laboratory for Cancer Research, Leidos Biomedical Research, Inc.

S

Suzanne I. Sandin

National Cancer Institute RAS Initiative, Cancer Research Technology Program, Frederick National Laboratory for Cancer Research, Leidos Biomedical Research, Inc.

J

Juliana A. Martinez Fiesco

Center for Structural Biology, Center for Cancer Research, National Cancer Institute

X

Xiaohua Zhang

F

Fikret Aydin

T

Timothy S. Carpenter

G

Grace M. Scheidemantle

National Cancer Institute RAS Initiative, Cancer Research Technology Program, Frederick National Laboratory for Cancer Research, Leidos Biomedical Research, Inc.

R

Robert A. D’Ippolito

National Cancer Institute RAS Initiative, Cancer Research Technology Program, Frederick National Laboratory for Cancer Research, Leidos Biomedical Research, Inc.

A

Alexandria L. Sohn

National Cancer Institute RAS Initiative, Cancer Research Technology Program, Frederick National Laboratory for Cancer Research, Leidos Biomedical Research, Inc.

C

Caroline J. DeHart

National Cancer Institute RAS Initiative, Cancer Research Technology Program, Frederick National Laboratory for Cancer Research, Leidos Biomedical Research, Inc.

R

Rebika Shrestha

K

Kelly Snead

National Cancer Institute RAS Initiative, Cancer Research Technology Program, Frederick National Laboratory for Cancer Research, Leidos Biomedical Research, Inc.

J

Jenna Hull

National Cancer Institute RAS Initiative, Cancer Research Technology Program, Frederick National Laboratory for Cancer Research, Leidos Biomedical Research, Inc.

J

Jeremy O. B. Tempkin

Biosciences and Biotechnology Division, Physical and Life Sciences Directorate, Lawrence Livermore National Laboratory

Y

Yue Yang

F

Felice C. Lightstone

F

Frederick H. Streitz

P

Ping Zhang

T

Thomas J. Turbyville

A

Andrew G. Stephen

D

Dominic Esposito

National Cancer Institute RAS Initiative, Cancer Research Technology Program, Frederick National Laboratory for Cancer Research, Leidos Biomedical Research, Inc.

H

Helgi I. Ingólfsson

D

Dwight V. Nissley

D

Deborah K. Morrison

Laboratory of Cell and Developmental Signaling, Center for Cancer Research, National Cancer Institute