An allosteric inhibitor of the Zika virus NS2B-NS3 protease with oral efficacy in mouse models

J Jesus M. Ontoria E Esther Torrente A Antonino Missineo C Cristina Alli R Rita Graziani S Silvia Conti M Monica Bisbocci A Antonio Quotadamo F Federica Ferrigno A Alessandra Corio G Giovanni Ievoli L Leda Bencheva J Jérôme Amaudrut S Silvana Vasile E Elisa Beghetto C Chantal Paolini N Nadine Alaimo M Maria Veneziano M Martina Nibbio M Maria V. Orsale G Giulia Proto F Fabrizio Colaceci L Laura Orsatti V Vincenzo Pucci R Romano Di Fabio L Licia Tomei C Christian Montalbetti A Alberto Bresciani C Carlo Toniatti G Giacomo Paonessa

Abstract

Abstract The mosquito-transmitted Zika virus (ZIKV) poses a global health threat, with no approved antiviral drugs or vaccines currently available. Here, we report the discovery of a series of ZIKV NS3 protease inhibitors identified through phenotypic high-throughput screening (HTS) using a ZIKV replicon-based cellular assay, and the subsequent selection of resistant mutants. These inhibitors, characterized by the presence of an N -acylsydnone imine group, bind to a previously undescribed allosteric pocket of the protease, locking the enzyme into a catalytically inactive conformation. We describe the characterization of IRBM-Z-1, our initial allosteric hit and IRBM-Z-2, a potent inhibitor of ZIKV infectivity and other orthoflavivirus proteases with a favourable in vitro and in vivo ADME profile, resulting in oral efficacy against ZIKV infection in mouse models, with potential as a prophylactic agent for human use.

Article Details

Volume / Issue Vol. 17, Issue 1
Published February 10, 2026
ISSN 2041-1723
Publisher Nature Portfolio

Journal Info

Nature Communications

Nature Portfolio

ISSN: 2041-1723 Open Access Life Sciences

Authors (30)

J

Jesus M. Ontoria

E

Esther Torrente

A

Antonino Missineo

C

Cristina Alli

R

Rita Graziani

S

Silvia Conti

M

Monica Bisbocci

A

Antonio Quotadamo

F

Federica Ferrigno

A

Alessandra Corio

G

Giovanni Ievoli

L

Leda Bencheva

J

Jérôme Amaudrut

S

Silvana Vasile

E

Elisa Beghetto

C

Chantal Paolini

N

Nadine Alaimo

M

Maria Veneziano

M

Martina Nibbio

M

Maria V. Orsale

G

Giulia Proto

F

Fabrizio Colaceci

L

Laura Orsatti

V

Vincenzo Pucci

R

Romano Di Fabio

L

Licia Tomei

C

Christian Montalbetti

A

Alberto Bresciani

C

Carlo Toniatti

G

Giacomo Paonessa