Activity-dependent citrate dynamics in neurons

P Paul C. Rosen (Department of Neurobiology, Harvard Medical School) P Panhui Fu (Department of Neurobiology, Harvard Medical School) B Beatriz Ferrán (Department of Biochemistry and Physiology, University of Oklahoma Health Sciences Center) E Erica Kim (Department of Neurobiology, Harvard Medical School) D Daniel J. Brooks (Department of Neurobiology, Harvard Medical School) D Daniel C. Lim (Department of Biology, Massachusetts Institute of Technology) C Carlos Manlio Díaz-García (Department of Biochemistry and Physiology, University of Oklahoma Health Sciences Center) G Gary Yellen (Department of Neurobiology, Harvard Medical School)

Abstract

Glycolytic enzymes sense metabolite levels to adapt rapidly to changing energy demands, but measuring the levels of these effectors with spatiotemporal precision in live cells has been challenging. We addressed this question in the context of neuronal depolarization, which activates glycolysis, focusing on the glycolysis inhibitor citrate. We engineered a pair of quantitative fluorescent biosensors for citrate that address several limitations (affinity, pH, Mg 2+ , and temperature) of existing citrate biosensors. Using two-photon fluorescence lifetime imaging, we found that free citrate in the cytosol of neurons in acute mouse brain slices declines two-to-threefold within seconds of neuronal activation and then returns to baseline over a few minutes. The stimulation-dependent citrate transient depends at least in part on the mitochondrial calcium uniporter. These types of live metabolite measurements are essential for achieving a nuanced understanding of the fast control of glycolysis.

Article Details

Volume / Issue Vol. 122, Issue 41
Published October 14, 2025
ISSN 0027-8424
Publisher National Academy of Sciences

Authors (8)

P

Paul C. Rosen

Department of Neurobiology, Harvard Medical School

P

Panhui Fu

Department of Neurobiology, Harvard Medical School

B

Beatriz Ferrán

Department of Biochemistry and Physiology, University of Oklahoma Health Sciences Center

E

Erica Kim

Department of Neurobiology, Harvard Medical School

D

Daniel J. Brooks

Department of Neurobiology, Harvard Medical School

D

Daniel C. Lim

Department of Biology, Massachusetts Institute of Technology

C

Carlos Manlio Díaz-García

Department of Biochemistry and Physiology, University of Oklahoma Health Sciences Center

G

Gary Yellen

Department of Neurobiology, Harvard Medical School