A Comprehensive <sup>19</sup> F NMR Framework for Fragment‐Based Drug Discovery: The Validated Screening Library OpenFL600 and Efficient Affinity Ranking by CSAR
Abstract
ABSTRACT Small‐molecule drug discovery relies on the identification of initial chemical starting points, or screening hits, and their subsequent optimization for potency and selectivity. Fragment‐based drug discovery (FBDD), particularly through NMR screening, is a powerful method for hit identification due to its high sensitivity. Here, we present the design and validation of a non‐proprietary NMR screening library (OpenFL600) capable of probing diverse binding pockets, as demonstrated for RNA, G protein‐coupled receptors (GPCRs), kinases, protein–protein interactions, and proteases. Our screening campaigns yielded specific hits for 11 respective targets and therefore valuable structure–activity relationship (SAR). The absence of promiscuous binders confirms the high quality of the OpenFL600 library, a result of both careful fragment selection and rigorous molecular quality control. Subsequent affinity ranking of identified hits—typically a laborious task—is considerably streamlined by fast chemical shift anisotropy (CSA) Affinity Ranking (CSAR). CSAR is enabled by providing CSA values for each fragment. This creates a highly efficient workflow, from initial hit screening to the prioritization of leads. In summary, we provide a comprehensive framework for NMR‐based screening across diverse target classes, assessing their druggability, and enabling efficient affinity ranking to facilitate hit‐to‐lead progression.
Article Details
Authors (17)
Simon H. Rüdisser
Gabriela Stadler
Department of Biology ETH Zürich Zürich Switzerland
Giacomo Padroni
Department of Biology ETH Zürich Zürich Switzerland
Daria Barbash
Department of Biology ETH Zürich Zürich Switzerland
Marco M. Ruckstuhl
Department of Biology ETH Zürich Zürich Switzerland
Nils Lorz
Department of Biology ETH Zürich Zürich Switzerland
Christina Jordan
Department of Biology ETH Zürich Zürich Switzerland
Sarah Skibinski
Department of Biology ETH Zürich Zürich Switzerland
Timo T. Stühlinger
Department of Biology ETH Zürich Zürich Switzerland
Sarah E. Kratzwald
Mag‐Lab Vienna Austria
Katharina M. Siess
Max Perutz Labs, University of Vienna and Medical University of Vienna
Sven Brüschweiler
Mag‐Lab Vienna Austria
Gerald Platzer
Resonate Bio Vienna Austria
Antoine Cléry
Department of Biology ETH Zürich Zürich Switzerland
Robert Konrat
Department of Structural and Computational Biology University of Vienna Vienna Austria
Frédéric H.‐.T. Allain
Department of Biology ETH Zürich Zürich Switzerland
Alvar D. Gossert
Department of Biology ETH Zürich Zürich Switzerland